Some of the stats I've been trying have flipped around some results (Brees higher; Young lower, for example.) Looking into them more. The guys are still pretty close together though, so you might push a few up and down, but the general tiers are pretty consistent.
I'll have to think about my personal rankings. Computer rankings, based on a configuration I've used pretty consistently:
Peyton
Montana
Elway
Brees
Favre
Rodgers
Young
Marino
Roethlisberger
Griese
Aikman
Kelly
Wilson
Stabler
Warner
Rivers
Friedman
Moon
Fouts
Eli
People love to focus on the top of the list, and I get it, but I think what's interesting is at the bottom. Eli is essentially tied with Fouts; their scores are almost exactly the same. Namath is right there, too, as is McNabb. Clearly this is right in the bubble territory.
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This has just reminded me how hard - or probably impossible - to objectively intra-rank guys within tiers. So
@Zarozzor brings up some great points about Luckman versus Baugh. You could really make a strong case for either guy, as is so often the case. On this configuration above, Baugh has 27.27 and Luckman 26.45. You're basically talking about statistical noise when you get to those levels...you put a little more weight on area and they change. But in terms of the general tiers, it's hard to push someone up or down like five slots.