2003. Peyton Manning leads the Colts to a division win. He throws for 4267 yards to lead the league and 29 TDs, overcoming a defense that allowed 336 points. Wins Co-MVP 2005. Tom Brady leads the Pats to a division title. Leads the league with 4110 yards and throws 26 TDs, overcoming a D that allowed 338 points.. Finishes a distant 3rd in the MVP behind Manning in 2nd. 2005 Peyton Manning leads the Colts to a 14-2 record with 3747 passing yards and 28 TDs, bouyed by a D allowing 247 points. Finishes 2nd in the MVP voting. 2003 Tom Brady leads the Pats to a 14-2 record with 3692 passing yards and 28 TDs, bouyed by a D that allowed 238 points. Doesnt get mentioned for MVP. Someone please explain the difference to me.